Heatmap Dendrogram Linker: Heatmap Plus Dendrogram in One View, Free & Online

Use this free heatmap dendrogram linker in your browser. No sign-up, no download and no upload: everything runs on your own device, so your data stays private.

What this tool does

A heatmap alone shows values, but the dendrogram beside it shows which rows behave alike, which is the insight most readers want. This tool draws both together: the colour grid for values and a branching sketch for row grouping. The pairing helps you spot blocks of similar rows instead of scanning numbers one by one.

How to use it

Paste or type your labelled matrix rows in the box above.
Adjust any settings, such as cutoffs, scales or styles, to match your data.
Click the run button and read the output below the tool.
Check the summary numbers before you copy anything into a document.
Copy the output, code or image into your figure, slide or report.

Worked example

Paste GeneA 2,8,5 then GeneB 9,3,6 then GeneC 4,7,1. The grid colours the high values dark and the low values pale, and the dendrogram sketch groups the rows beside it. Swap two rows and the colour pattern moves with them, which confirms the rows carry the values, not the positions.

Tips for better results

Scale your values to a common range before pasting, or one large column will dominate the colours.

Honest limits

The dendrogram is a fixed branching sketch, not a clustering computed from your matrix. For a real analysis figure, cluster in your statistics software and use this tool for drafts.

Choosing the right settings

Start with the default values. They are chosen to show a sensible result at once, so you can see the layout before you touch your own data. Then change one setting at a time. Changing one thing at a time is the fastest way to learn what each control does, and it stops two changes from cancelling each other out. If the output looks wrong, check the input format first: a missing comma, a swapped column or a stray space causes most errors, and the tool reports what it received in its summary line.

Using the result in a figure

For a figure, keep the output simple. One message per figure, short labels, and a caption that states the method and the settings you used will serve readers better than a dense, decorated chart. If a journal or supervisor will see the result, note the tool name, the input values and any cutoff in your methods or caption, so the figure can be reproduced later. That habit also helps you: six months from now, the caption is the only record of how the figure was made.

Common questions

Do I need an account? No. The heatmap dendrogram linker runs entirely in your browser with no sign-up and no saved data.

Is my data uploaded anywhere? No. Your labelled matrix rows stays on your device, which is why the tool is safe for unpublished work.

Can I use the output in a paper or presentation? Yes. The output is yours to reuse; just check it visually once, note the settings in your caption, and credit the method, not the tool, in your references.

What if the result looks wrong? Check the input format first, then change one setting at a time. Most errors come from a missing comma, a swapped column, or a value outside the expected range, and the summary line under the tool shows what it actually received.

Try the heatmap dendrogram linker above with the sample data, then with your own. It is free, it needs no account, and it works in any modern browser.

When you reuse the result, keep a short record of the inputs and settings you used. A one-line note in your project file, such as the data pasted, the cutoff chosen and the date, is enough to reproduce the figure later. If a collaborator questions a number, that note lets you rebuild the exact output in seconds instead of guessing what changed.

Embed this tool on your website — free

Copy the code below to add this working tool to your own page. A small credit link stays with it — that’s all we ask.